Genomic Data Analysis with Variant of Secure Multi-Party Computation Technique
PDF

Keywords

Secure
Multi-Party
Privacy
Genetic
Attack
Security

How to Cite

Yogi, Manas Kumar, and Yamuna Mundru. 2024. “Genomic Data Analysis With Variant of Secure Multi-Party Computation Technique”. Journal of Trends in Computer Science and Smart Technology 5 (4): 450-70. https://doi.org/10.36548/jtcsst.2023.4.006.

Abstract

The increasing availability of genomic data for research purposes necessitates innovative approaches to ensure privacy while facilitating collaborative analysis. This study explores the integration of a variant of Secure Multi-Party Computation (SMPC) techniques into genomic data analysis. The conventional challenges of sharing sensitive genetic information among multiple entities, such as research institutions or healthcare providers, are addressed by leveraging advanced cryptographic protocols. The research focuses on the development and implementation of a secure framework for collaborative genomic data analysis using an adapted SMPC variant. This variant is designed to efficiently handle the complexities of genetic data while ensuring robust privacy preservation. By encrypting individual genomic inputs and enabling computations without revealing the raw data, the proposed SMPC variant facilitates joint analyses, contributing to advancements in personalized medicine, disease research, and genetic epidemiology. The variants of SMPC, namely oblivious transfer protocol, is used, this allows the receiver to obtain one out of several pieces of information forwarded by the sender without revealing which one they obtained. It can be integrated into SMPC protocols for enhancing the privacy with less effort and cost. The proposed mechanism involves the validation of the SMPC variant through simulations using real-world genomic datasets and assessing its performance in terms of computational efficiency and privacy preservation. Results from experiments demonstrate the feasibility and effectiveness of the proposed technique in enabling secure multi-party genomic data analysis. This research contributes to the evolving landscape of privacy-preserving techniques in genomics, offering a promising avenue for collaborative research without compromising the confidentiality of sensitive genetic information.

PDF

References

Cho, Hyunghoon, David J. Wu, and Bonnie Berger. "Secure genome-wide association analysis using multiparty computation." Nature biotechnology 36.6 (2018): 547-551.

Zhao, Chuan, et al. "Secure multi-party computation: theory, practice and applications." Information Sciences 476 (2019): 357-372.

Blanton, Marina, and Fattaneh Bayatbabolghani. "Efficient server-aided secure two-party function evaluation with applications to genomic computation." Cryptology ePrint Archive (2015).

Huang, Zhicong. On Secure Cloud Computing for Genomic Data: From Storage to Analysis. No. THESIS. EPFL, 2018.

Sousa, João Sá, et al. "Efficient and secure outsourcing of genomic data storage." BMC medical genomics 10.2 (2017): 15-28.

Blatt, Marcelo, et al. "Secure large-scale genome-wide association studies using homomorphic encryption." Proceedings of the National Academy of Sciences 117.21 (2020): 11608-11613.

Evans, David, Vladimir Kolesnikov, and Mike Rosulek. "A pragmatic introduction to secure multi-party computation." Foundations and Trends® in Privacy and Security 2.2-3 (2018): 70-246.

Evans, David, Vladimir Kolesnikov, and Mike Rosulek. "A pragmatic introduction to secure multi-party computation." Foundations and Trends® in Privacy and Security 2.2-3 (2018): 70-246.

Asvadishirehjini, Aref, Murat Kantarcioglu, and Bradley Malin. "A Framework for Privacy-Preserving Genomic Data Analysis Using Trusted Execution Environments." In 2020 Second IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications (TPS-ISA), pp. 138-147. IEEE, 2020..

Aziz, Md Momin Al, et al. "Privacy-preserving techniques of genomic data—a survey." Briefings in bioinformatics 20.3 (2019): 887-895.

Froelicher, David, Juan R. Troncoso-Pastoriza, Jean Louis Raisaro, Michel A. Cuendet, Joao Sa Sousa, Hyunghoon Cho, Bonnie Berger, Jacques Fellay, and Jean-Pierre Hubaux. "Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption." Nature communications 12, no. 1 (2021): 5910.

Saadeh, Angelo. Applications of secure multi-party computation in Machine Learning. Diss. Télécom Paris, 2023.

Jain, Shreyan. Developing a cloud-based secure computation platform for genomics research. Diss. Massachusetts Institute of Technology, 2020.

Abinaya, B., and S. Santhi. "A survey on genomic data by privacy-preserving techniques perspective." Computational Biology and Chemistry 93 (2021): 107538.

Pascoal, Túlio. Secure, privacy-preserving and practical collaborative Genome-Wide Association Studies. Diss. University of Luxembourg, Luxembourg, 2022.

https://github.com/ML-BioinfoCEITEC/genomic_benchmarks/tree/main/datasets/demo_human_or_worm on her name.