Abstract
Within the realm of computational pathology, the detection of mitotic cells poses a formidable challenge. Many existing approaches rely on hand-crafted features, which often result in poor generalization, as their performance degrades across different tissue types, staining processes, and the various scanners used for digitizing whole slide images. The Multi-Patch Mitosis-Detect (MPMD) framework is suggested in the proposed work to detect mitosis from histology images. To identify mitotic reference regions, the proposed MPMD framework uses the detection module for segmentation by utilizing the Recurrent Residual Convolutional Unit (RRCU). The classification model then employs Inception Recurrence Residual Convolutional Neural Networks (IRR-CNN) to validate the mitotic regions. Furthermore, a novel confidence analysis and the MPMD technique are combined to improve the performance of the detection in the testing phase. The novelty of the proposed multi-patch approach is that: (a) Mean Squared Error (MSE) loss is used instead of Dice Coefficient (DC) loss for both training and testing; (b) Global Average Pooling is used in place of fully connected layers in the classification model to reduce the number of network parameters. Experimental findings demonstrate the performance improvement of the proposed approach compared to existing state-of-the-art methodologies.
References
Khosravi, Pegah, Ehsan Kazemi, Marcin Imielinski, Olivier Elemento, and Iman Hajirasouliha. "Deep convolutional neural networks enable discrimination of heterogeneous digital pathology images." EBioMedicine 27 (2018): 317-328.
Veta, Mitko, Paul J. Van Diest, Stefan M. Willems, Haibo Wang, Anant Madabhushi, Angel Cruz-Roa, Fabio Gonzalez et al. "Assessment of algorithms for mitosis detection in breast cancer histopathology images." Medical image analysis 20, no. 1 (2015): 237-248.
Cireşan, Dan C., Alessandro Giusti, Luca M. Gambardella, and Jürgen Schmidhuber. "Mitosis detection in breast cancer histology images with deep neural networks." In International conference on medical image computing and computer-assisted intervention, pp. 411-418. Berlin, Heidelberg: Springer Berlin Heidelberg, 2013.
MITOS-ATYPIA-14. (2014). Mitos-Atypia-14-Dataset Available: https://mitos-atypia-14.grand-challenge. org/dataset/
Alom, Md Zahangir, Mahmudul Hasan, Chris Yakopcic, Tarek M. Taha, and Vijayan K. Asari. "Improved inception-residual convolutional neural network for object recognition." Neural Computing and Applications 32, no. 1 (2020): 279-293.
Akram, Saad Ullah, Talha Qaiser, Simon Graham, Juho Kannala, Janne Heikkilä, and Nasir Rajpoot. "Leveraging unlabeled whole-slide-images for mitosis detection." In International Workshop on Ophthalmic Medical Image Analysis, Cham: Springer International Publishing, (2018): 69-77.
Sigirci, I. Onur, Abdulkadir Albayrak, and Gokhan Bilgin. "Detection of mitotic cells in breast cancer histopathological images using deep versus handcrafted features." Multimedia Tools and Applications 81, no. 10 (2022): 13179-13202.
Litjens, Geert, Thijs Kooi, Babak Ehteshami Bejnordi, Arnaud Arindra Adiyoso Setio, Francesco Ciompi, Mohsen Ghafoorian, Jeroen Awm Van Der Laak, Bram Van Ginneken, and Clara I. Sánchez. "A survey on deep learning in medical image analysis." Medical image analysis 42 (2017): 60-88.
Janowczyk, Andrew, and Anant Madabhushi. "Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases." Journal of pathology informatics 7, no. 1 (2016): 29.
Madabhushi, Anant, and George Lee. "Image analysis and machine learning in digital pathology: Challenges and opportunities." Medical image analysis 33 (2016): 170-175.
Kitrungrotsakul, Titinunt, Xian-Hau Han, Yutaro Iwamoto, Satoko Takemoto, Hideo Yokota, Sari Ipponjima, Tomomi Nemoto, Wei Xiong, and Yen-Wei Chen. "A cascade of 2.5 D CNN and bidirectional CLSTM network for mitotic cell detection in 4D microscopy image." IEEE/ACM transactions on computational biology and bioinformatics 18, no. 2 (2019): 396-404.
Chen, Hao, Xi Wang, and Pheng Ann Heng. "Automated mitosis detection with deep regression networks." In 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), IEEE, (2016): 1204-1207.
Chen, Hao, Qi Dou, Xi Wang, Jing Qin, and Pheng Heng. "Mitosis detection in breast cancer histology images via deep cascaded networks." In Proceedings of the AAAI conference on artificial intelligence, vol. 30, no. 1. 2016.
Li, Chao, Xinggang Wang, Wenyu Liu, and Longin Jan Latecki. "DeepMitosis: Mitosis detection via deep detection, verification and segmentation networks." Medical image analysis 45 (2018): 121-133.
Beevi, K. Sabeena, Madhu S. Nair, and G. R. Bindu. "Automatic mitosis detection in breast histopathology images using convolutional neural network based deep transfer learning." Biocybernetics and Biomedical Engineering 39, no. 1 (2019): 214-223.
Piansaddhayanaon, Chawan, Sakun Santisukwongchote, Shanop Shuangshoti, Qingyi Tao, Sira Sriswasdi, and Ekapol Chuangsuwanich. "ReCasNet: Improving consistency within the two-stage mitosis detection framework." Artificial Intelligence in Medicine 135 (2023): 102462.
Wang, Huadeng, Hao Xu, Bingbing Li, Xipeng Pan, Lingqi Zeng, Rushi Lan, and Xiaonan Luo. "A novel dataset and a two-stage mitosis nuclei detection method based on hybrid anchor branch." Biomedical Signal Processing and Control 87 (2024): 105374.
Alom, Md Zahangir, Chris Yakopcic, Mahmudul Hasan, Tarek M. Taha, and Vijayan K. Asari. "Recurrent residual U-Net for medical image segmentation." Journal of medical imaging 6, no. 1 (2019): 014006-014006.
Öztürk, Şaban, and Bayram Akdemir. "A convolutional neural network model for semantic segmentation of mitotic events in microscopy images." Neural Computing and Applications 31, no. 8 (2019): 3719-3728.
Irshad, Humayun. "Automated mitosis detection in histopathology using morphological and multi-channel statistics features." Journal of pathology informatics 4, no. 1 (2013): 10.
Li, Yuguang, Ezgi Mercan, Stevan Knezevich, Joann G. Elmore, and Linda G. Shapiro. "Efficient and Accurate Mitosis Detection-A Lightweight RCNN Approach." In ICPRAM, (2018): 69-77.
Paul, Angshuman, and Dipti Prasad Mukherjee. "Mitosis detection for invasive breast cancer grading in histopathological images." IEEE transactions on image processing 24, no. 11 (2015): 4041-4054.
Li, Chao, Xinggang Wang, Wenyu Liu, Longin Jan Latecki, Bo Wang, and Junzhou Huang. "Weakly supervised mitosis detection in breast histopathology images using concentric loss." Medical image analysis 53 (2019): 165-178.
